species:   Drmel
pid:       MI0017757
parent:    dme-mir-4971
paralog:   
locus:     NT_033779.5:3463290-3463400
matures:   ['GGAUGAGCUUGUCAGUGGCGGA', 'GGCCACUGACAAUGCCCAUUCAC']
srr:       SRR11906542
genome:    /Users/jax/+Genomes/Animal_genomes/Drmel.GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906542.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906542.cram NT_033779.5:3463290-3463400

0 out of bounds
5 alignments
5 proper strand
4 stranded perfect matches

          *************************                                         *************************          
UCGGCCCUCGACACGGUGGAUGAGCUUGUCAGUGGCGGAUCCAGGAGCAAUUCUGCCGCUGGCGACAGAUCAUCGGCCACUGACAAUGCCCAUUCACUGUUCGAGGAGAUC
.....((((((.((((((((((.(((((((((((((.(((((((..(((....)))..)))).........))).))))))))))).)).)))))))))))))))).....
-----------------GGAUGAGCUUGUCAGUGGCGGA------------------------------------------------------------------------ l=22 a=0 c
--------------------------------------------------------------------------GGCCACUGACAAUGCCCAUUCAC-------------- l=23 a=0 c*
------------------------------------------------------------------------------ACUGACAAUGCCCAUUCACUGUU---------- l=23 a=1 ma
------------ACGGUGGAUGAGCUUGUCAGUGG---------------------------------------------------------------------------- l=23 a=0 ma*

------------------------------------------------------------------------------ACUGACAAUGCCCAUUCACUGUU---------- l=23 a=1 (ma)
-------------------------------------------------------------------------CGGCCACUGACAAUGCCCAUUCACa------------- l=25 a=1 
------------------------------------------------------------------------UCGGCCACUGACAAUGCCCAUUC---------------- l=23 a=1 
-------------------AUGAGCUUGUCAGUGGCGGA------------------------------------------------------------------------ l=20 a=1 
-------------------AUGAGCUUGUCAGUGGCGGAUC---------------------------------------------------------------------- l=22 a=1 

mb-01011
ax-1011011
ku-01
ss-100111111100
fn-011
